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Description du projet

mkESA is a program for constructing enhanced suffix arrays (ESAs) from biological sequence data. The program is based on an implementation of Manzini's lightweight Deep-Shallow algorithm, which can also utilize multiple CPUs/cores for extra performance. The generated output is compatible with the output of mkvtree from the Vmatch package.

Système requise

System requirement is not defined
Information regarding Project Releases and Project Resources. Note that the information here is a quote from Freecode.com page, and the downloads themselves may not be hosted on OSDN.

2009-07-15 06:05
1.0.4

Ce communiqué ne bloque plus si la séquence d'entrée se termine par un caractère générique.
This release no longer crashes if the input sequence ends in a wildcard character.

2009-07-09 19:34
1.0.3

Un alphabet prédéfini a été ajouté pour l'ADN mélangé / données d'ARN. Corrections de bugs mineures et les modifications ont été appliquées. Le script de configuration définit désormais automatiquement le chemin runtime linker recherche (rpath).
A predefined alphabet was added for mixed DNA/RNA data. Minor bugfixes and changes have been applied. The configure script now automatically sets the runtime linker search path (rpath).

2009-06-11 21:34
1.0.2

Publication initiale sur Freshmeat.
Initial release on Freshmeat.

Project Resources