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Description du projet

NGSEP (Next Generation Sequencing Eclipse Plugin), an integrated framework for analysis of high throughput sequencing reads. The main functionality of NGSEP is the variants detector, which allows to make simultaneous discovery of SNVs, small indels, and CNVs.

NGSEP also provides a user interface for bowtie2 to perform mapping to the reference genome and other utilities such as alignments sorting, merging of variants from different samples, and functional annotation of variants. NGSEP is based on Eclipse which is one of the leading development environments for Java.

Note: Since we offer different distribution alternatives for different kinds of users, the quick download (green) button may not lead you to the version of the product that you need. Please visit the web page to choose the distribution of NGSEP that better suits your data analysis environment.

Système requise

Système d'exploitation: MacOSX, Linux, Windows 7

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Latest 5 files
Nom Taille Date Télécharger compter
NGSEPguifx_4.2.0.tar.gz 12.3 MB 2022-01-08 06:39 0
NGSEPcore_4.2.0.tar.gz 11.7 MB 2022-01-08 06:39 1
README.txt 90.5 KB 2022-01-08 06:33 3
CHANGELOG 21.6 KB 2022-01-08 06:33 7
NGSEPcore_4.2.0.jar 3.3 MB 2022-01-08 06:32 0
All Files
SourceCode
NGSEPguifx_4.2.0.tar.gz12.3 MB2022-01-08 06:390
NGSEPcore_4.2.0.tar.gz11.7 MB2022-01-08 06:391
NGSEPguifx_4.1.0.tar.gz12.1 MB2021-02-12 13:130
NGSEPcore_4.1.0.tar.gz11.5 MB2021-02-12 13:131
NGSEPguifx_4.0.3.tar.gz11.7 MB2020-11-01 23:470
NGSEPcore_4.0.3.tar.gz11.4 MB2020-11-01 23:470
NGSEPcore_4.0.2.tar.gz11.4 MB2020-08-27 22:120
NGSEPguifx_4.0.2.tar.gz11.7 MB2020-08-18 03:170
NGSEPguifx_4.0.1.tar.gz11.1 MB2020-05-04 11:220
NGSEPcore_4.0.1.tar.gz10.4 MB2020-05-04 11:220
NGSEPcore_4.0.0.tar.gz10.3 MB2020-02-20 02:100
NGSEPcore_3.3.2.tar.gz21.5 MB2019-07-14 03:101
NGSEPplugin_3.3.2.tar.gz11.8 MB2019-07-14 03:090
NGSEPcore_3.3.1.tar.gz19.4 MB2019-03-16 01:501
NGSEPplugin_3.3.1.tar.gz7.5 MB2019-03-16 01:490
NGSEPcore_3.3.0.tar.gz17.3 MB2018-10-06 05:422
NGSEPplugin_3.3.0.tar.gz7.4 MB2018-10-06 05:420
NGSEPcore_3.2.0.tar.gz14.7 MB2018-07-04 23:081
NGSEPplugin_3.2.0.tar.gz6.2 MB2018-07-04 23:080
NGSEPcore_3.1.2.tar.gz13.2 MB2018-04-15 07:401
NGSEPplugin_3.1.2.tar.gz6.1 MB2018-04-15 07:400
NGSEPcore_3.1.1.tar.gz6.3 MB2018-01-30 05:581
NGSEPplugin_3.1.1.tar.gz6.0 MB2018-01-30 05:580
NGSEPcore_3.1.0.tar.gz4.9 MB2017-07-25 01:551
NGSEPplugin_3.1.0.tar.gz2.6 MB2017-07-25 01:554
NGSEPcore_3.0.2.tar.gz3.6 MB2017-01-23 11:3611
NGSEPplugin_3.0.2.tar.gz2.6 MB2017-01-23 11:360
net.sf.ngsep_3.0.1.tar.gz2.6 MB2016-08-09 04:510
NGSEPcore_3.0.1.tar.gz2.3 MB2016-08-09 04:516
net.sf.ngsep_3.0.0.tar.gz2.6 MB2016-07-08 12:040
NGSEPcore_3.0.0.tar.gz2.3 MB2016-07-08 12:041
net.sf.ngsep_1.0.5.tar.gz2.0 MB2016-01-26 23:320
NGSTools_2.1.5.tar.gz1.6 MB2016-01-26 23:328
NGSTools_2.1.4.tar.gz1.6 MB2015-10-21 02:297
net.sf.ngsep_1.0.4.tar.gz2.0 MB2015-10-21 02:290
net.sf.ngsep_1.0.3.tar.gz1.9 MB2015-08-03 22:462
NGSTools_2.1.3.tar.gz1.5 MB2015-08-03 22:4615
NGSTools_2.1.2.tar.gz1.5 MB2015-04-30 02:122
net.sf.ngsep_1.0.2.tar.gz1.9 MB2015-04-30 02:122
NGSTools_2.1.1.tar.gz1.5 MB2015-02-14 07:144
net.sf.ngsep_1.0.1.tar.gz1.9 MB2015-02-14 07:142
NGSTools_2.1.0.tar.gz1.5 MB2014-12-24 01:443
net.sf.ngsep_1.0.0.tar.gz1.8 MB2014-12-24 01:441
net.sf.ngsep_0.1.8.tar.gz3.5 MB2014-09-23 23:233
NGSTools_2.0.7.tar.gz1.4 MB2014-09-23 23:237
NGSTools_2.0.6.tar.gz1.4 MB2014-08-05 06:1511
net.sf.ngsep_0.1.7.tar.gz3.3 MB2014-08-05 06:141
net.sf.ngsep_0.1.6.tar.gz3.7 MB2014-03-11 23:245
net.sf.ngsep_0.1.5.tar.gz3.7 MB2014-01-28 00:544
NGSTools_2.0.5.tar.gz1.3 MB2014-01-28 00:545
net.sf.ngsep_0.1.4.tar.gz3.7 MB2013-10-10 06:560
NGSTools_2.0.4.tar.gz1.3 MB2013-10-08 06:131
NGSTools_2.0.3.tar.gz581.8 KB2013-07-19 04:267
net.sf.ngsep_0.1.3.tar.gz3.4 MB2013-07-19 04:261
net.sf.ngsep_0.1.2.tar.gz3.4 MB2013-07-09 06:231
NGSTools_2.0.2.tar.gz1.3 MB2013-07-09 05:223
net.sf.ngsep_0.1.1.tar.gz3.7 MB2013-05-24 06:051
NGSTools_2.0.1.tar.gz572.0 KB2013-05-24 05:591
NGSTools_2.0.0.tar.gz570.4 KB2013-05-08 02:108
Library
README.txt90.5 KB2022-01-08 06:333
CHANGELOG21.6 KB2022-01-08 06:337
NGSEPcore_4.2.0.jar3.3 MB2022-01-08 06:320
GUIFX
olderVersions
NGSEPwindows_4.1.0.zip44.6 MB2022-01-08 06:310
NGSEPlinux_4.1.0.tar.gz48.4 MB2022-01-08 06:300
NGSEPmac_4.1.0.tar.gz44.3 MB2022-01-08 06:300
NGSEPwindows_4.0.3.zip44.4 MB2021-02-12 13:330
NGSEPlinux_4.0.3.tar.gz48.1 MB2021-02-12 13:320
NGSEPmac_4.0.3.tar.gz44.1 MB2021-02-12 13:311
NGSEPwindows_4.0.2.zip44.4 MB2021-01-29 01:090
NGSEPwindows_4.0.1.zip43.9 MB2021-01-29 01:080
NGSEPmac_4.0.2.tar.gz44.1 MB2021-01-29 00:420
NGSEPmac_4.0.1.tar.gz43.6 MB2021-01-29 00:410
NGSEPlinux_4.0.2.tar.gz48.1 MB2021-01-29 00:290
NGSEPlinux_4.0.1.tar.gz47.6 MB2021-01-29 00:290
NGSEPwindows_4.2.0.zip44.8 MB2022-01-08 06:220
NGSEPlinux_4.2.0.tar.gz48.5 MB2022-01-08 06:200
NGSEPmac_4.2.0.tar.gz44.5 MB2022-01-08 06:200
training
runMappingBowtie21.3 KB2021-10-01 22:500
ManualNGSEP_v4.0.3.pdf10.3 MB2020-11-17 03:471
Tutorial.txt16.5 KB2020-11-01 23:5360
QuickStart.txt20.8 KB2020-11-01 23:532
README.txt0.8 KB2020-11-01 23:531
yeastDemo_ann_q40_s_fi_I2_noREP_noCNV.vcf.gz663.1 KB2020-02-20 02:070
runNGSEP0.5 KB2020-02-20 02:071
runGenotyping0.6 KB2020-02-20 02:071
calculateReadposStatsPeaks0.2 KB2020-02-20 02:070
UserManualNGSEP_V331.pdf15.1 MB2019-04-26 10:463
Saccharomyces_cerevisiae.fa12.1 MB2018-04-15 07:110
Saccharomyces_cerevisiae_STRs.txt2.6 MB2018-04-15 07:110
Saccharomyces_cerevisiae.gff35.5 MB2018-04-15 07:111
Saccharomyces_cerevisiae_repeats.txt241.4 KB2018-04-15 07:110
Eclipse+Plugin
eclipse-neon2-win32-x86_64_NGSEP.zip201.0 MB2019-07-14 03:3326
OnlyPlugin
NGSEPplugin_3.3.2.201907121544.jar6.3 MB2019-07-14 03:140
olderVersions
NGSEPplugin_3.3.1.201903140636.jar4.2 MB2019-07-14 03:130
NGSEPplugin_3.3.0.201810051117.jar4.1 MB2019-03-16 01:551
NGSEPplugin_3.2.0.201807040824.jar3.5 MB2018-10-06 05:441
NGSEPplugin_3.1.2.201804141729.jar3.5 MB2018-07-04 23:121
NGSEPplugin_3.1.1.201801290854.jar3.4 MB2018-04-15 07:130
NGSEPplugin_3.1.0.201707221527.jar3.3 MB2018-01-30 06:250
net.sf.ngsep_3.0.1.201608051808.jar3.2 MB2017-07-25 01:570
net.sf.ngsep_3.0.0.201607062226.jar3.2 MB2017-07-25 01:570
net.sf.ngsep_1.0.0.201601251106.jar2.7 MB2017-07-25 01:570
net.sf.ngsep_1.0.0.201510201120.jar2.6 MB2017-07-25 01:570
net.sf.ngsep_1.0.0.201507220947.jar2.6 MB2017-07-25 01:570
net.sf.ngsep_1.0.0.201409230806.jar3.9 MB2017-07-25 01:570
net.sf.ngsep_1.0.0.201504290825.jar2.5 MB2017-07-25 01:570
net.sf.ngsep_1.0.0.201412231134.jar2.3 MB2017-07-25 01:570
net.sf.ngsep_1.0.0.201408041043.jar3.7 MB2017-07-25 01:570
net.sf.ngsep_1.0.0.201401270809.jar4.1 MB2017-07-25 01:570
net.sf.ngsep_1.0.0.201403070829.jar4.1 MB2017-07-25 01:570
NGSEPplugin_3.0.2.201701221824.jar3.3 MB2017-07-25 01:570