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MySQL is a widely used and fast SQL database server. It is a client/server implementation that consists of a server daemon (mysqld) and many different client programs/libraries.

Webmin is a web-based interface for system administration for Unix. Using any browser that supports tables and forms, you can setup user accounts, internet services, DNS, file sharing and so on.

GNU grep is based on a fast lazy-state deterministic matcher (about twice as fast as stock Unix egrep) hybridized with a Boyer-Moore-Gosper search for a fixed string that eliminates impossible text from being considered by the full regexp matcher without necessarily having to look at every character. The result is typically many times faster than Unix grep or egrep.

GNU parallel is a shell tool for executing jobs in parallel locally or using remote computers. A job is typically a single command or a small script that has to be run for each of the lines in the input. The typical input is a list of files, a list of hosts, a list of users, a list of URLs, or a list of tables. If you use xargs today you will find GNU parallel very easy to use, as GNU parallel is written to have the same options as xargs. If you write loops in shell, you will find GNU parallel may be able to replace most of the loops and make them run faster by running several jobs in parallel. GNU parallel makes sure output from the commands is the same output as you would get had you run the commands sequentially. This makes it possible to use output from GNU parallel as input for other programs.

rsync is a replacement for rcp (and scp) that has many more features. It uses the "rsync algorithm" which provides a very fast method for remote files into sync. It does this by sending just the differences in the files across the link, without requiring that both sets of files are present at one of the ends of the link beforehand.

The awk utility interprets a special-purpose programming language that makes it possible to handle simple data-reformatting jobs with just a few lines of code.

Exim is a message transfer agent (MTA) developed at the University of Cambridge for use on Unix systems connected to the Internet. In style it is similar to Smail 3, but its facilities are much more extensive. Exim is in use at many sites around the world.

AFD is a program to automatically distribute files either locally or to remote hosts. The files are distributed by using FTP or SMTP, and can be sent in parallel and with priority. It provides a GUI to monitor and control the distribution and extensive logging of all activities.

PLOTICUS is a command line utility for creating bar, line, pie, boxplot, scatterplot, sweep, heatmap, vector, timeline, Venn diagrams, and other types of charts and plots. ploticus is good for automated or just-in-time graph generation. It handles date, time, and categorical data nicely, and has some basic statistical capabilities. It can output to GIF, PNG, SVG, SWF, JPEG, PostScript, EPS, and X11. You can use convenient preset options or create complex scripts with rich and detailed color and style operations.

gFTP is a free multithreaded file transfer client for *NIX based machines running X11R6 or later. It has text and GTK+ 1.2/2.x interfaces and supports the FTP, FTPS (control connection only), HTTP, HTTPS, FSP, and SSH protocols and has FTP and HTTP proxy server support. It supports UNIX, EPLF, Novell, MacOS, VMS, MVS, and NT (DOS) style directory listings, and has a bookmarks menu that allows you to quickly connect to remote sites. The code is fully internationalized and there are currently 45 translations available.

Web Calendar is a powerful group calendaring and scheduling system. It is a Web based application that makes it easy to publish and manage calendar events on the internet. It includes an impressive set of features, including an easy to use interface, rich functionality, and sophisticated scheduling. It is a CGI application. It runs under your Web server, so to use it, all you need is a browser. There is no proprietary software that needs to be installed on the client side. Web Calendar runs under Unix and Windows.

makeself is a small shell script that generates a self-extractable compressed TAR archive from a directory. The resulting file appears as a shell script, and can be launched as is. The archive will then uncompress itself to a temporary directory and an arbitrary command will be executed (for example, an installation script). This is pretty similar to archives generated with WinZip Self-Extractor in the Windows world.